1. Liu, G., Swihart, M.S. and Neelamegham, S.,"Sensitivity, principal component and flux analysis applied to signal transduction: The case of epidermal growth factor mediated signaling", Bioinformatics, 2005 Apr 1;21(7):1194-202. Epub 2004 Nov 5.
2. Liu, G. and Neelamegham S. "In silico Biochemical Reaction Network
Analysis (IBRENA): a package for simulation and analysis of reaction
networks." Bioinformatics. 2008 Feb 28; [Epub ahead of print]
Software package described here along with manual can be downloaded
from: http://www.eng.buffalo.edu/~neel/ibrena
3. Liu, G.*, Marathe, D.D.* and Neelamegham, S. "Systems level modeling of cellular glycosylation reaction networks: O-linked glycan formation on natural selectin ligands", in review, 2008. Download Glycosylation Reaction Network files in SBML format [All 15 models that converged]
* Joint first authors