Suggested and Required Readings for BIO 458/558

*Copies of these articles are available for photocopy outside of Dr. Yan’s (H212) and Dr. Coffroth’s (H621) offices
 
19, 21 January 2000  
   
Required readings: Avise, Ch. 1, 2
Optional readings: (1) Li, W.H. 1997. Molecular Evolution. Chapter 1: Gene structure, genetic code and mutation. (Background genetics)
  1. Hartl, D. L. 1988. A Primer of Population Genetic. Chapter 1: (Allele frequencies and Hardy-Weinberg Equilibrium)
  2. Hartl, D. L. and Clark, A. G. 1997. Principles of Population Genetics Ch. 1 and Ch. 3
  3. Li, W.H. 1997. Molecular Evolution Chapter 1, pp. 23-34 (Classes of Mutations)
  4. Li, W.H..1997. Molecular Evolution. Chapter 7 (Rates and Patterns of Nucleotide Substitution)
Optional Readings for Lab 1
  1. Ausubel, F., R. Brent, R. Kingston, D. Moore, J.G. Seidman, J. Smith, and K. Struhl (editors). 1987. Current Protocols in molecular biology. John Wiley & Sons, Hew York, New York, USA.
  2. Sambrook, J.E., F. Fritsch, and T. Maniatis 1989. Molecular cloning: a laboratory manual. Second edition. Cold Spring Harbor Press, New York, New York. USA
  3. Seutin, G. B., N. White, and P.T. Boag. 1991. Preservation of avian blood and tissue samples for DNA analysis. Canadian Journal of Zoology. 69:82-90.
  4. Milligan, B. G. 1992. Plant DNA isolation. Pp 59-88 in A. R. Hoelzel, ed. Molecular genetic analysis of populations: a practical approach. IRL Press, Oxford, UK.
  5. Morin, P.A. and D. S. Woodruff. 1992. Paternity exclusion using multiple hypervariable microsatellite loci amplified from nuclear DNA of hair cells. Pp. 63-81 in R.D. Martin, A.F. Dixon and E.J. Wickings, editors. Paternity in primates: genetic tests and theories. Karger, Basel, Switzerland.
 
26, 28 January 2000  
   
Required readings:
  1. Avise, Ch. 3
  2. Parker, P.G., et al., 1998. What can molecules tell us about populations: Choosing and using a molecular marker. Ecology: 79:361-382*
  3. Cruzan, M. B. 1998. Genetic markers in plant evolutionary ecology. Ecology 79: 400-412*
Optional readings: Molecular techniques: (1) Hoelzel, A. R. and G. A. Dover. 1991. Molecular Genetic Ecology. Ch. 2 Molecular approaches to the analysis of genetic variation. Pp.15-29. IRL Press. Oxford.

Allozymes: (1) May, B. Starch gel electrophoresis of allozymes. Pp. 1-28. In: Hoelzel, A. R. (ed). Molecular Genetic Analysis of Populations: A Practical Approach. 1994. IRL Press Oxford.

(2) Murphy, R.W. et al. 1996. Proteins: Ispzyme Electrophoresis.  in Hillis, D.M., Mortiz, C, and Mable, B (eds). Molecular Systematics. Ch. 4, 51-20 (and references within)

   
2, 4 February 2000  
   
Required readings:
  1. Avise, Ch. 3
  2. Lessios, H.A. 1992. Testing electrophoretic data for agreement with Hardy-Weinberg expectations. Mar. Biol. 112:517-523 *
Optional readings:  
   
9, 11 February 2000  
   
Required readings: Avise, Ch. 4, 8
Optional readings:  
   
16, 18 February 2000  
   
Required readings: Avise, Ch. 5
Optional readings:  
   
23, 25 February 2000 Avise, Ch. 6
   
1, 3 March 2000  
   
Required readings:  
Optional readings:  
   
15, 17 March 2000  
   
Required readings: Avise, Ch. 6
Optional readings:  
   
22, 24 March 2000  
   
Required readings: Avise, Ch. 6
Optional readings:  
   
29, 31 March 2000  
   
Required readings: Avise, Ch. 6
Optional readings:  
   
5, 7 April 2000 Avise, Ch. 9
   
Required readings:  
Optional readings:  
   
12, 14 April 2000  
   
Required readings:  
Optional readings:  
   
19, 21 April 2000  
   
Required readings:  
Optional readings: